AnnotParam class

AnnotParam-class

AnnotParamCharacter-class

AnnotParamObject-class

A class holding all the necessary parameters to retrieve the necessary
annotation for processing an RNA-Seq experiment.

classes

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

AnnotParam class function

Objects can be created by calls of the
form <code>new("AnnotParamCharacter", ...)</code> or <code>new("AnnotParamObject", ...)</code> 
(both subject to API changes) or using the 
<code><a href="/link/AnnotParam?package=easyRNASeq&version=2.8.2&to=easyRNASeq%3AeasyRNASeq-AnnotParam" rd-options="easyRNASeq:easyRNASeq-AnnotParam" data-mini-rdoc="easyRNASeq:easyRNASeq-AnnotParam::AnnotParam">AnnotParam</a></code> constructor (failsafe, prefered).
The class <code>AnnotParam</code> in itself is virtual and hence cannot be instantiated.

AnnotParam class: Class "AnnotParam"

Description

Arguments

Objects from the Class

See Also

Examples